WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in starved nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

203 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000112 alh-6 F56D12.1 Caenorhabditis elegans
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00001035 dnj-17 T03F6.2 Caenorhabditis elegans
WBGene00001044 dnj-26 Y39C12A.8 Caenorhabditis elegans
WBGene00001048 dnj-30 Y71F9B.16 Caenorhabditis elegans
WBGene00001105 dsl-3 Y41D4B.10 Caenorhabditis elegans
WBGene00001413 fem-3 C01F6.4 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001639 gly-14 M01F1.1 Caenorhabditis elegans
WBGene00001864 him-5 D1086.4 Caenorhabditis elegans
WBGene00003062 lpd-6 K09H9.6 Caenorhabditis elegans
WBGene00003076 lsm-1 F40F8.9 Caenorhabditis elegans
WBGene00003396 mom-4 F52F12.3 Caenorhabditis elegans
WBGene00003414 mrp-8 Y75B8A.26 Caenorhabditis elegans
WBGene00003507 mut-14 C14C11.6 Caenorhabditis elegans
WBGene00003587 ned-8 F45H11.2 Caenorhabditis elegans
WBGene00003783 nos-1 R03D7.7 Caenorhabditis elegans
WBGene00004044 plk-3 F55G1.8 Caenorhabditis elegans
WBGene00004380 rnf-1 C06A5.9 Caenorhabditis elegans
WBGene00004960 spe-6 Y66D12A.20 Caenorhabditis elegans
WBGene00005019 sqv-1 D2096.4 Caenorhabditis elegans
WBGene00006374 syx-4 T01B11.3 Caenorhabditis elegans
WBGene00006473 tag-124 E02H1.3 Caenorhabditis elegans
WBGene00007334 C05C10.7 C05C10.7 Caenorhabditis elegans
WBGene00007616 rpoa-12 C15H11.8 Caenorhabditis elegans
WBGene00007643 marc-3 C17E4.3 Caenorhabditis elegans
WBGene00007732 spe-44 C25G4.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

0 Regulated By Gene

0 Regulated By Molecule