WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Description  Transcripts that showed significantly decreased expression after 8 hour of exposure of C.elegans strain N2 to pathogenic B. thuringiensis B-18247.
Primary Identifier  WBPaper00040209:B.thuringiensis_downregulated_N2 Regulated By Treatment  Bacteria infection: Bacillus thuringiensis B-18247

0 Anatomy Terms

77 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000679 col-105 F58F6.2 Caenorhabditis elegans
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000785 cpr-5 W07B8.5 Caenorhabditis elegans
WBGene00001155 ech-6 T05G5.6 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00002125 inx-3 F22F4.2 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans
WBGene00003094 lys-5 F58B3.2 Caenorhabditis elegans
WBGene00003144 max-2 Y38F1A.10 Caenorhabditis elegans
WBGene00004323 rde-1 K08H10.7 Caenorhabditis elegans
WBGene00004414 rpl-3 F13B10.2 Caenorhabditis elegans
WBGene00004751 sea-2 K10G6.3 Caenorhabditis elegans
WBGene00005044 sra-18 F28C12.2 Caenorhabditis elegans
WBGene00006692 twk-42 W06D12.2 Caenorhabditis elegans
WBGene00006925 vit-1 K09F5.2 Caenorhabditis elegans
WBGene00006927 vit-3 F59D8.1 Caenorhabditis elegans
WBGene00006928 vit-4 F59D8.2 Caenorhabditis elegans
WBGene00007016 mdt-15 R12B2.5 Caenorhabditis elegans
WBGene00007637 dhhc-7 C17D12.1 Caenorhabditis elegans
WBGene00008607 F09B12.3 F09B12.3 Caenorhabditis elegans
WBGene00008920 eef-1G F17C11.9 Caenorhabditis elegans
WBGene00009046 F22B8.3 F22B8.3 Caenorhabditis elegans
WBGene00010052 F54D5.7 F54D5.7 Caenorhabditis elegans
WBGene00010204 cpr-9 F57F5.1 Caenorhabditis elegans
WBGene00010277 F58G6.7 F58G6.7 Caenorhabditis elegans
WBGene00011308 pnn-1 R186.7 Caenorhabditis elegans
WBGene00012463 nadk-2 Y17G7B.10 Caenorhabditis elegans
WBGene00012664 Y39B6A.1 Y39B6A.1 Caenorhabditis elegans
WBGene00012790 Y43D4A.4 Y43D4A.4 Caenorhabditis elegans
WBGene00012864 Y45F3A.9 Y45F3A.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule