WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in lin-36(n766) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-36(n766)_upregulated

0 Anatomy Terms

70 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00001016 dna-2 F43G6.1 Caenorhabditis elegans
WBGene00001049 dog-1 F33H2.1 Caenorhabditis elegans
WBGene00001166 eftu-2 ZK328.2 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001688 gpr-1 F22B7.13 Caenorhabditis elegans
WBGene00001689 gpr-2 C38C10.4 Caenorhabditis elegans
WBGene00001869 him-10 R12B2.4 Caenorhabditis elegans
WBGene00002068 ify-1 C27A2.3 Caenorhabditis elegans
WBGene00002231 knl-1 C02F5.1 Caenorhabditis elegans
WBGene00002985 lig-1 C29A12.3 Caenorhabditis elegans
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans
WBGene00003036 lin-53 K07A1.12 Caenorhabditis elegans
WBGene00003405 mre-11 ZC302.1 Caenorhabditis elegans
WBGene00003418 msh-2 H26D21.2 Caenorhabditis elegans
WBGene00003499 rde-3 K04F10.6 Caenorhabditis elegans
WBGene00003504 mut-7 ZK1098.8 Caenorhabditis elegans
WBGene00004051 parg-1 F20C5.1 Caenorhabditis elegans
WBGene00004296 rad-50 T04H1.4 Caenorhabditis elegans
WBGene00004312 rba-1 K07A1.11 Caenorhabditis elegans
WBGene00004326 rde-4 T20G5.11 Caenorhabditis elegans
WBGene00004775 sep-1 Y47G6A.12 Caenorhabditis elegans
WBGene00005832 srw-85 C25F9.1 Caenorhabditis elegans
WBGene00006974 zen-4 M03D4.1 Caenorhabditis elegans
WBGene00007303 rnh-1.3 C04F12.9 Caenorhabditis elegans
WBGene00007710 rsa-1 C25A1.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003021 lin-36 F44B9.6 Caenorhabditis elegans

0 Regulated By Molecule