WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2. Description  Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in body wall muscle.
Primary Identifier  WBPaper00066447:Day8_vs_Day1_downregulated_BodyWallMuscle
Paste the following link
Lists
This ExpressionCluster isn't in any lists. Upload a list.

1 Anatomy Terms

Definition Name Synonym Primary Identifier
type of 95 cells that make up muscles of the body wall. body wall muscle cell body muscle cell WBbt:0006804

9 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003321 mir-228 T12E12.7 Caenorhabditis elegans
WBGene00003340 mir-246 ZK593.10 Caenorhabditis elegans
WBGene00003301 mir-73 T24D8.9 Caenorhabditis elegans
WBGene00045343 mir-786 C39D10.12 Caenorhabditis elegans
WBGene00003330 mir-237 F22F1.4 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule