WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed miRNAs were identified using DEGseq based on unique molecular identifier (UMI). A minimum UMI sum of 10 in 3 replicates was set as the threshold of expression. MiRNAs with more than five reads were defined as expressed. Differential expression of miRNAs was analysed by t-test (P value < 0.05 and fold-change > 1.5 or < 0.67) after Box-Cox transformation. MiRNA targets were identified by TargetScanWorm (Release 6.2) and Pearson Correlation Coefficient smaller than -0.2. Description  Micro RNAs that showed significantly decreased expression in day 8 adults comparing to in day 1 adults in neuron.
Primary Identifier  WBPaper00066447:Day8_vs_Day1_downregulated_neuron
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
Major cell type of nervous tissue, specialized for transmission of information in the form of patterns of impulses. neuron neurone WBbt:0003679

26 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002285 let-7 C05G5.6 Caenorhabditis elegans
WBGene00002993 lin-4 F59G1.6 Caenorhabditis elegans
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003261 mir-2 M04C9.7 Caenorhabditis elegans
WBGene00003289 mir-61 F55A11.9 Caenorhabditis elegans
WBGene00003312 mir-84 B0395.4 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003278 mir-50 Y71G12B.29 Caenorhabditis elegans
WBGene00003260 mir-1 T09B4.11 Caenorhabditis elegans
WBGene00003285 mir-57 T09A5.13 Caenorhabditis elegans
WBGene00003273 mir-45 ZK930.11 Caenorhabditis elegans
WBGene00003272 mir-44 ZK930.10 Caenorhabditis elegans
WBGene00003286 mir-58.1 Y67D8A.4 Caenorhabditis elegans
WBGene00003321 mir-228 T12E12.7 Caenorhabditis elegans
WBGene00003281 mir-53 F36H1.8 Caenorhabditis elegans
WBGene00003280 mir-52 Y37A1B.16 Caenorhabditis elegans
WBGene00045326 mir-789.2 T28F3.10 Caenorhabditis elegans
WBGene00003301 mir-73 T24D8.9 Caenorhabditis elegans
WBGene00003309 mir-81 T07D1.6 Caenorhabditis elegans
WBGene00045342 mir-785 Y41G9A.11 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00003330 mir-237 F22F1.4 Caenorhabditis elegans
WBGene00003277 mir-49 F19C6.6 Caenorhabditis elegans
WBGene00003326 mir-233 W03G11.5 Caenorhabditis elegans
WBGene00003282 mir-54 F09A5.5 Caenorhabditis elegans
WBGene00003275 mir-47 K02B9.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064
  At 20 Centigrade: 8-9 days after L4-adult molt. 11-12 days after first cleavage. 8-days post-L4 adult hermaphrodite Ce WBls:0000672

0 Processes

0 Regulated By Gene

0 Regulated By Molecule