WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Description  Genes that were upregulated in lin-15B(n744).
Primary Identifier  WBPaper00038168:lin-15B(n744)_upregulated

0 Anatomy Terms

1000 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000025 abu-2 F19G12.7 Caenorhabditis elegans
WBGene00000029 abu-6 C03A7.7 Caenorhabditis elegans
WBGene00000030 abu-7 C03A7.8 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000082 adt-1 C02B4.1 Caenorhabditis elegans
WBGene00000084 aex-1 D2030.10 Caenorhabditis elegans
WBGene00000097 aip-1 F58E10.4 Caenorhabditis elegans
WBGene00000101 aka-1 D1022.7 Caenorhabditis elegans
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000208 trip-4 Y53F4B.15 Caenorhabditis elegans
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000235 baf-1 B0464.7 Caenorhabditis elegans
WBGene00000247 bec-1 T19E7.3 Caenorhabditis elegans
WBGene00000366 cbp-1 R10E11.1 Caenorhabditis elegans
WBGene00000391 cdd-1 C47D2.2 Caenorhabditis elegans
WBGene00000393 cdf-1 C15B12.7 Caenorhabditis elegans
WBGene00000406 cdk-4 F18H3.5 Caenorhabditis elegans
WBGene00000415 ced-1 Y47H9C.4 Caenorhabditis elegans
WBGene00000421 ced-7 C48B4.4 Caenorhabditis elegans
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000466 cel-1 C03D6.3 Caenorhabditis elegans
WBGene00000473 cey-2 F46F11.2 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023497 lin-15B ZK662.4 Caenorhabditis elegans

0 Regulated By Molecule