WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Salmon was used to map the mRNA-seq reads with the worm database WS268, and its output files were imported to DESeq2 in R. The differentially expressed genes were filtered by fold change more than 2 and adjusted p-value < 0.05. The scatter plots were generated by the plot function in R. Description  Transcripts that showed significantly increased expression in hda-1[KKRR]-smo-1 in gonads dissected from 1-day old adult animals.
Primary Identifier  WBPaper00061479:hda-1(ne4748)_upregulated
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
organ producing either sperm or ova. gonad   WBbt:0005175

269 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000057 acr-18 F28F8.1 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000086 aex-3 C02H7.3 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000150 apm-1 F55A12.7 Caenorhabditis elegans
WBGene00000170 aqp-2 C01G6.1 Caenorhabditis elegans
WBGene00000207 asb-2 F02E8.1 Caenorhabditis elegans
WBGene00000224 atgp-1 F26D10.9 Caenorhabditis elegans
WBGene00000368 ccb-1 T28F2.5 Caenorhabditis elegans
WBGene00000443 ceh-20 F31E3.1 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000523 clc-2 C01C10.1 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000657 col-81 F38A3.1 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000698 col-124 C24F3.6 Caenorhabditis elegans
WBGene00000703 col-129 M18.1 Caenorhabditis elegans
WBGene00000712 col-139 F41F3.4 Caenorhabditis elegans
WBGene00000732 col-159 F57B1.3 Caenorhabditis elegans
WBGene00000733 col-160 F57B1.4 Caenorhabditis elegans
WBGene00000942 deb-1 ZC477.9 Caenorhabditis elegans
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
WBGene00000990 dhs-27 C04F6.5 Caenorhabditis elegans
WBGene00001008 dlk-1 F33E2.2 Caenorhabditis elegans
WBGene00001169 eef-1A.2 R03G5.1 Caenorhabditis elegans
WBGene00001208 egl-44 F28B12.2 Caenorhabditis elegans
WBGene00001366 exc-5 C33D9.1 Caenorhabditis elegans
WBGene00001480 fmo-5 H24K24.5 Caenorhabditis elegans
WBGene00001489 frm-2 T04C9.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001834 hda-1 C53A5.3 Caenorhabditis elegans

0 Regulated By Molecule