WormMine: ExpressionCluster WBPaper00037950:coelomocytes_L1-larva

Definition	Name	Synonym	Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles.	coelomocyte		WBbt:0005751

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00000003	aat-2	F07C3.7	Caenorhabditis elegans
WBGene00000009	aat-8	F28F9.4	Caenorhabditis elegans
WBGene00000010	aat-9	Y53H1C.1	Caenorhabditis elegans
WBGene00000014	abf-3	F54B8.5	Caenorhabditis elegans
WBGene00000019	abt-1	C24F3.5	Caenorhabditis elegans
WBGene00000024	abu-1	AC3.3	Caenorhabditis elegans
WBGene00000025	abu-2	F19G12.7	Caenorhabditis elegans
WBGene00000041	aco-2	F54H12.1	Caenorhabditis elegans
WBGene00000048	acr-9	C40C9.2	Caenorhabditis elegans
WBGene00000056	acr-17	F53E10.2	Caenorhabditis elegans
WBGene00000060	acr-21	F27B3.2	Caenorhabditis elegans
WBGene00000062	acr-23	F59B1.9	Caenorhabditis elegans
WBGene00000068	acy-1	F17C8.1	Caenorhabditis elegans
WBGene00000071	acy-4	T01C2.1	Caenorhabditis elegans
WBGene00000072	add-1	F39C12.2	Caenorhabditis elegans
WBGene00000075	adm-4	ZK154.7	Caenorhabditis elegans
WBGene00000080	adr-2	T20H4.4	Caenorhabditis elegans
WBGene00000092	ags-3	F32A6.4	Caenorhabditis elegans
WBGene00000095	aha-1	C25A1.11	Caenorhabditis elegans
WBGene00000100	ajm-1	C25A11.4	Caenorhabditis elegans
WBGene00000101	aka-1	D1022.7	Caenorhabditis elegans
WBGene00000105	alg-1	F48F7.1	Caenorhabditis elegans
WBGene00000107	alh-1	F54D8.3	Caenorhabditis elegans
WBGene00000108	alh-2	K04F1.15	Caenorhabditis elegans
WBGene00000110	alh-4	T05H4.13	Caenorhabditis elegans
WBGene00000111	alh-5	T08B1.3	Caenorhabditis elegans
WBGene00000139	amx-3	F25C8.2	Caenorhabditis elegans
WBGene00000140	anc-1	ZK973.6	Caenorhabditis elegans
WBGene00000143	apc-2	K06H7.6	Caenorhabditis elegans
WBGene00000144	apc-10	F15H10.3	Caenorhabditis elegans

Remark	Definition	Other Name	Public Name	Primary Identifier
	The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch.		L1 larva Ce	WBls:0000024

Algorithm	A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes.	Description	Genes that showed expression levels higher than the corresponding reference sample (embryonic 24hr reference).
Primary Identifier	WBPaper00037950:coelomocytes_L1-larva_expressed

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