WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq package with an FDR of < 0.05. Description  Genes significantely Up-regulated by GRO-seq in csr-1 hypomorph vs. N2 using DESeq p < 0.05.
Primary Identifier  WBPaper00045050:csr-1(hypomorph)_upregulated
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0 Anatomy Terms

514 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000171 aqp-3 Y69E1A.7 Caenorhabditis elegans
WBGene00000185 arg-1 F31A9.3 Caenorhabditis elegans
WBGene00000213 asm-3 W03G1.7 Caenorhabditis elegans
WBGene00000457 ceh-36 C37E2.4 Caenorhabditis elegans
WBGene00000490 che-11 C27A7.4 Caenorhabditis elegans
WBGene00000636 col-60 F22D6.10 Caenorhabditis elegans
WBGene00000738 col-165 F14H12.1 Caenorhabditis elegans
WBGene00001436 fkh-4 C29F7.5 Caenorhabditis elegans
WBGene00001528 gcy-1 AH6.1 Caenorhabditis elegans
WBGene00001539 gcy-13 F23H12.6 Caenorhabditis elegans
WBGene00001540 gcy-14 ZC412.2 Caenorhabditis elegans
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
WBGene00001603 gln-2 K03H1.1 Caenorhabditis elegans
WBGene00001618 glr-7 C43H6.9 Caenorhabditis elegans
WBGene00001734 grl-25 ZK643.8 Caenorhabditis elegans
WBGene00001770 gst-22 F21H7.1 Caenorhabditis elegans
WBGene00001804 gur-3 ZC504.5 Caenorhabditis elegans
WBGene00001842 her-1 ZK287.8 Caenorhabditis elegans
WBGene00002037 hum-4 F46C3.3 Caenorhabditis elegans
WBGene00002067 ifp-1 C43C3.1 Caenorhabditis elegans
WBGene00002216 klp-3 T09A5.2 Caenorhabditis elegans
WBGene00002976 lev-9 T07H6.5 Caenorhabditis elegans
WBGene00002994 lin-5 T09A5.10 Caenorhabditis elegans
WBGene00003058 lov-1 ZK945.9 Caenorhabditis elegans
WBGene00003522 nas-3 K06A4.1 Caenorhabditis elegans
WBGene00003541 nas-22 T11F9.6 Caenorhabditis elegans
WBGene00003597 nhl-1 F54G8.4 Caenorhabditis elegans
WBGene00003679 nhr-89 E03H4.13 Caenorhabditis elegans
WBGene00003770 nlp-32 F30H5.2 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017641 csr-1 F20D12.1 Caenorhabditis elegans

0 Regulated By Molecule