WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated. Description  Genes with increased expression after 24 hours of infection by Harposporium Fold changes shown are pathogen vs OP50.
Primary Identifier  WBPaper00038438:Harposporium_24hr_upregulated_RNAseq Regulated By Treatment  Fungi infection: Harposporium sp.

0 Anatomy Terms

2390 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000012 abf-1 C50F2.9 Caenorhabditis elegans
WBGene00000047 acr-8 ZC504.2 Caenorhabditis elegans
WBGene00000050 acr-11 D2092.3 Caenorhabditis elegans
WBGene00000061 lgc-11 F48E3.7 Caenorhabditis elegans
WBGene00000139 amx-3 F25C8.2 Caenorhabditis elegans
WBGene00000193 arl-6 C38D4.8 Caenorhabditis elegans
WBGene00000242 bbs-2 F20D12.3 Caenorhabditis elegans
WBGene00000255 bli-5 F45G2.5 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000388 cdc-25.3 ZK637.11 Caenorhabditis elegans
WBGene00000389 cdc-25.4 R05H5.2 Caenorhabditis elegans
WBGene00000415 ced-1 Y47H9C.4 Caenorhabditis elegans
WBGene00000433 ceh-8 ZK265.4 Caenorhabditis elegans
WBGene00000440 ceh-17 D1007.1 Caenorhabditis elegans
WBGene00000442 ceh-19 F20D12.6 Caenorhabditis elegans
WBGene00000452 ceh-31 C33D12.1 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000539 cln-3.1 F07B10.1 Caenorhabditis elegans
WBGene00000606 col-17 F11G11.10 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00000630 col-53 M01A12.1 Caenorhabditis elegans
WBGene00000656 col-80 C09G5.5 Caenorhabditis elegans
WBGene00000660 col-85 T21B4.2 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000675 col-101 K02D7.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

2 Processes

Primary Identifier
WBbiopr:00000008
WBbiopr:00000039

0 Regulated By Gene

0 Regulated By Molecule