WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify genes that were significantly differentially expressed between each mutant and the control, linear modelling and empirical Bayes analysis was performed using the limma package. Limma computes an empirical Bayes adjustment for the t-test (moderated t-statistic), which is more robust than the standard two-sample t-test comparisons. To correct for multiple testing, Benjamin and Hochbergs method to control for false discovery rate was used. Genes with an adjusted P value of 0.05 or smaller and a fold-change in expression larger than twofold were considered differentially expressed. Description  Genes down regulated in tax-6(ok2065) comparing to in N2.
Primary Identifier  WBPaper00038172:tax-6null_down_regulated

0 Anatomy Terms

978 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000002 aat-1 F27C8.1 Caenorhabditis elegans
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000088 aex-5 F32A7.6 Caenorhabditis elegans
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000139 amx-3 F25C8.2 Caenorhabditis elegans
WBGene00000164 apm-3 F53H8.1 Caenorhabditis elegans
WBGene00000197 aars-2 F28H1.3 Caenorhabditis elegans
WBGene00000239 bas-1 C05D2.4 Caenorhabditis elegans
WBGene00000245 bca-1 T13C5.5 Caenorhabditis elegans
WBGene00000251 bli-1 C09G5.6 Caenorhabditis elegans
WBGene00000252 bli-2 F59E12.12 Caenorhabditis elegans
WBGene00000392 cdd-2 F49E8.4 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000502 chp-1 Y110A7A.13 Caenorhabditis elegans
WBGene00000521 cky-1 C15C8.2 Caenorhabditis elegans
WBGene00000541 cln-3.3 ZC190.1 Caenorhabditis elegans
WBGene00000625 col-48 Y54E10BL.2 Caenorhabditis elegans
WBGene00000646 H17B01.2 H17B01.2 Caenorhabditis elegans
WBGene00000655 col-79 C09G5.3 Caenorhabditis elegans
WBGene00000683 col-109 Y38C1BA.3 Caenorhabditis elegans
WBGene00000684 col-110 F19C7.7 Caenorhabditis elegans
WBGene00000722 col-149 B0024.1 Caenorhabditis elegans
WBGene00000771 cpb-2 C30B5.3 Caenorhabditis elegans
WBGene00000778 cpn-2 D1069.2 Caenorhabditis elegans
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000785 cpr-5 W07B8.5 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00000930 dao-4 ZC373.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006527 tax-6 C02F4.2 Caenorhabditis elegans

0 Regulated By Molecule