WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data normalization, scaling and 2 -way Anova was used to identify differentially expressed genes, using Partek Geno mics Suite (v6.5). Average linkage gene clustering was performed with a Euclidean distance using Hierarchical clustering. The genes with statistically significant changes between the treatments and strains were identified using Anova streamlined (Partek Genomic Suite (v6.5)). Only genes with a fold change higher than 1.3 and p-value lower than 0.05 were considered. Description  Genes up-regulated during spg-7(RNAi) treatment.
Primary Identifier  WBPaper00041370:spg-7(RNAi)_upregulated

0 Anatomy Terms

682 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000013 abf-2 C50F2.10 Caenorhabditis elegans
WBGene00000084 aex-1 D2030.10 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000217 asp-4 R12H7.2 Caenorhabditis elegans
WBGene00000219 asp-6 F21F8.7 Caenorhabditis elegans
WBGene00000247 bec-1 T19E7.3 Caenorhabditis elegans
WBGene00000372 cyp-13A7 T10B9.10 Caenorhabditis elegans
WBGene00000412 cdr-1 F35E8.11 Caenorhabditis elegans
WBGene00000500 chn-1 T09B4.10 Caenorhabditis elegans
WBGene00000522 clc-1 C09F12.1 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00000536 clk-1 ZC395.2 Caenorhabditis elegans
WBGene00000540 cln-3.2 C01G8.2 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000761 coq-1 C24A11.9 Caenorhabditis elegans
WBGene00000764 coq-4 T03F1.2 Caenorhabditis elegans
WBGene00000767 coq-8 C35D10.4 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000830 ctl-1 Y54G11A.6 Caenorhabditis elegans
WBGene00000834 cua-1 Y76A2A.2 Caenorhabditis elegans
WBGene00000835 cuc-1 ZK652.11 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00000977 dhs-14 R05D8.8 Caenorhabditis elegans
WBGene00000985 dhs-22 C15H11.4 Caenorhabditis elegans
WBGene00001027 dnj-9 F11G11.7 Caenorhabditis elegans
WBGene00001028 dnj-10 F22B7.5 Caenorhabditis elegans
WBGene00001058 dpf-5 R11E3.8 Caenorhabditis elegans
WBGene00001093 drp-1 T12E12.4 Caenorhabditis elegans
WBGene00001158 ech-9 F01G10.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans

0 Regulated By Molecule