WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in seam cell according to single cell RNAseq.
Primary Identifier  WBPaper00061340:Seam_cell
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
a group of hypodermal cells that lie along the apical midline of the hypodermis, at the extreme left and right sides between nose and tail seam cell lateral hypodermis WBbt:0005753

300 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000109 alh-3 F36H1.6 Caenorhabditis elegans
WBGene00000138 amx-2 B0019.1 Caenorhabditis elegans
WBGene00000253 bli-3 F56C11.1 Caenorhabditis elegans
WBGene00000266 bre-1 C53B4.7 Caenorhabditis elegans
WBGene00000272 bro-1 F56A3.5 Caenorhabditis elegans
WBGene00000295 cat-1 W01C8.6 Caenorhabditis elegans
WBGene00000439 ceh-16 C13G5.1 Caenorhabditis elegans
WBGene00000558 cnc-4 R09B5.9 Caenorhabditis elegans
WBGene00000594 col-3 T28C6.6 Caenorhabditis elegans
WBGene00000599 col-10 B0222.8 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000641 col-65 K08C9.4 Caenorhabditis elegans
WBGene00000653 col-77 M195.1 Caenorhabditis elegans
WBGene00000678 col-104 F58F6.1 Caenorhabditis elegans
WBGene00000681 col-107 C34H4.4 Caenorhabditis elegans
WBGene00000691 col-117 T28C6.4 Caenorhabditis elegans
WBGene00000695 col-121 F56D5.1 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000739 col-166 T07H6.3 Caenorhabditis elegans
WBGene00000740 col-167 T10E10.2 Caenorhabditis elegans
WBGene00000969 dhs-5 F56D1.5 Caenorhabditis elegans
WBGene00000972 dhs-8 K10H10.3 Caenorhabditis elegans
WBGene00001064 dpy-2 T14B4.6 Caenorhabditis elegans
WBGene00001065 dpy-3 EGAP7.1 Caenorhabditis elegans
WBGene00001072 dpy-10 T14B4.7 Caenorhabditis elegans
WBGene00001074 dpy-13 F30B5.1 Caenorhabditis elegans
WBGene00001075 dpy-14 H27M09.4 Caenorhabditis elegans
WBGene00001076 dpy-17 F54D8.1 Caenorhabditis elegans
WBGene00001105 dsl-3 Y41D4B.10 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule