WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly decreased expression in dpl-1(n2994) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:dpl-1(n2994)_downregulated

0 Anatomy Terms

111 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000606 col-17 F11G11.10 Caenorhabditis elegans
WBGene00000618 col-41 T10B10.1 Caenorhabditis elegans
WBGene00000649 col-73 F11G11.12 Caenorhabditis elegans
WBGene00000653 col-77 M195.1 Caenorhabditis elegans
WBGene00000757 col-184 F15A2.1 Caenorhabditis elegans
WBGene00000781 cpr-1 C52E4.1 Caenorhabditis elegans
WBGene00000879 cyn-3 Y75B12B.5 Caenorhabditis elegans
WBGene00001066 dpy-4 Y41E3.2 Caenorhabditis elegans
WBGene00001067 dpy-5 F27C1.8 Caenorhabditis elegans
WBGene00001071 dpy-9 T21D12.2 Caenorhabditis elegans
WBGene00001074 dpy-13 F30B5.1 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001877 his-3 T10C6.12 Caenorhabditis elegans
WBGene00001878 his-4 T10C6.11 Caenorhabditis elegans
WBGene00001881 his-7 F45F2.4 Caenorhabditis elegans
WBGene00001882 his-8 F45F2.12 Caenorhabditis elegans
WBGene00001883 his-9 ZK131.3 Caenorhabditis elegans
WBGene00001884 his-10 ZK131.4 Caenorhabditis elegans
WBGene00001885 his-11 ZK131.5 Caenorhabditis elegans
WBGene00001886 his-12 ZK131.6 Caenorhabditis elegans
WBGene00001887 his-13 ZK131.7 Caenorhabditis elegans
WBGene00001888 his-14 ZK131.8 Caenorhabditis elegans
WBGene00001889 his-15 ZK131.9 Caenorhabditis elegans
WBGene00001890 his-16 ZK131.10 Caenorhabditis elegans
WBGene00001891 his-17 K06C4.5 Caenorhabditis elegans
WBGene00001893 his-19 K06C4.11 Caenorhabditis elegans
WBGene00001894 his-20 K06C4.4 Caenorhabditis elegans
WBGene00001895 his-21 K06C4.3 Caenorhabditis elegans
WBGene00001896 his-22 K06C4.12 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001061 dpl-1 T23G7.1 Caenorhabditis elegans

0 Regulated By Molecule