WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  CellRanger, DecontX, Monocle3, Louvain algorithm. Description  Single-cell RNA-Seq cell group 23 expressed in: Intestine middle.
Primary Identifier  WBPaper00065623:23

3 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772
Cylindrical hypodermal syncytium in head hyp5 lineage name: ABarpappap WBbt:0004685
Cylindrical hypodermal syncytium in head hyp6 lineage name: ABarpaapaa WBbt:0004679

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000214 asp-1 Y39B6A.20 Caenorhabditis elegans
WBGene00002272 lec-9 C16H3.2 Caenorhabditis elegans
WBGene00004423 rpl-11.2 F07D10.1 Caenorhabditis elegans
WBGene00004494 rps-25 K02B2.5 Caenorhabditis elegans
WBGene00004990 spp-5 T08A9.9 Caenorhabditis elegans
WBGene00007112 B0035.13 B0035.13 Caenorhabditis elegans
WBGene00017691 ilys-5 F22A3.6 Caenorhabditis elegans
WBGene00019744 M02H5.8 M02H5.8 Caenorhabditis elegans
WBGene00015913 C17F4.7 C17F4.7 Caenorhabditis elegans
WBGene00012615 dct-16 Y38H6C.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule