WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Affymetrix TAS software that computed for each probe estimates of fold enrichment (in linear scale) over hybridization with input DNA. At the same time, TAS calculated for each probe a p-value by applying a Wilcoxon signed rank test. A threshold of 2.5 was selected, which corresponds to probe intensities approximately 2.5 times stronger on the ChIP array than on the Input array. Additional TAS threshold parameters were MinRun=180 bp, MaxGap=300 bp. TAS analysis showed that the selected threshold of 2.5 corresponds approximately to a p-value of 0.01. Description  Potental DAF-12 target genes identified by ChIP-chip analysis performed on strain ALF9 [daf-12
Primary Identifier  WBPaper00040221:DAF-12_target_ALF9

0 Anatomy Terms

48 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000246 bcc-1 M7.3 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans
WBGene00001439 fkh-7 F26D12.1 Caenorhabditis elegans
WBGene00002344 let-70 M7.1 Caenorhabditis elegans
WBGene00003003 lin-14 T25C12.1 Caenorhabditis elegans
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003548 nas-30 Y95B8A.1 Caenorhabditis elegans
WBGene00003599 nhl-3 W04H10.3 Caenorhabditis elegans
WBGene00003648 nhr-58 R11G11.2 Caenorhabditis elegans
WBGene00003722 nhr-132 R11G11.1 Caenorhabditis elegans
WBGene00003915 pan-1 M88.6 Caenorhabditis elegans
WBGene00004762 sel-5 F35G12.3 Caenorhabditis elegans
WBGene00005855 srw-108 R11G11.5 Caenorhabditis elegans
WBGene00006739 ulp-4 C41C4.6 Caenorhabditis elegans
WBGene00006775 unc-39 F56A12.1 Caenorhabditis elegans
WBGene00007967 cyp-25A4 C36A4.6 Caenorhabditis elegans
WBGene00008052 ctns-1 C41C4.7 Caenorhabditis elegans
WBGene00008549 din-1 F07A11.6 Caenorhabditis elegans
WBGene00009439 mlcd-1 F35G12.1 Caenorhabditis elegans
WBGene00009440 idhg-1 F35G12.2 Caenorhabditis elegans
WBGene00010882 atg-7 M7.5 Caenorhabditis elegans
WBGene00011503 gcc-2 T05G5.9 Caenorhabditis elegans
WBGene00012385 Y5F2A.4 Y5F2A.4 Caenorhabditis elegans
WBGene00012813 Y43F8B.2 Y43F8B.2 Caenorhabditis elegans
WBGene00013019 Y48G10A.2 Y48G10A.2 Caenorhabditis elegans
WBGene00015156 cwf-19L2 B0361.2 Caenorhabditis elegans
WBGene00015759 C14C6.5 C14C6.5 Caenorhabditis elegans
WBGene00017428 F13D11.3 F13D11.3 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000908 daf-12 F11A1.3 Caenorhabditis elegans

0 Regulated By Molecule