WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with increased expression in N2 L2 larva comparing to in N2 L1 larva.
Primary Identifier  WBPaper00045316:miRNA_N2_L2_vs_L1_upregulated_adult

0 Anatomy Terms

22 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003039 mir-48 F56A12.3 Caenorhabditis elegans
WBGene00003308 mir-80 K01F9.3 Caenorhabditis elegans
WBGene00003335 mir-241 F56A12.4 Caenorhabditis elegans
WBGene00003328 mir-235 T09B4.12 Caenorhabditis elegans
WBGene00045329 mir-795 F33E2.9 Caenorhabditis elegans
WBGene00045328 mir-794 T07D10.7 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003305 mir-77 T21B4.13 Caenorhabditis elegans
WBGene00003294 mir-66 Y48G9A.15 Caenorhabditis elegans
WBGene00003331 mir-238 K01F9.5 Caenorhabditis elegans
WBGene00003314 mir-86 Y56A3A.34 Caenorhabditis elegans
WBGene00003337 mir-243 R08C7.14 Caenorhabditis elegans
WBGene00003321 mir-228 T12E12.7 Caenorhabditis elegans
WBGene00003298 mir-70 T10H9.7 Caenorhabditis elegans
WBGene00003309 mir-81 T07D1.6 Caenorhabditis elegans
WBGene00003341 mir-247 C39E6.7 Caenorhabditis elegans
WBGene00045358 mir-797 C39E6.8 Caenorhabditis elegans
WBGene00003323 mir-230 F46G11.5 Caenorhabditis elegans
WBGene00003330 mir-237 F22F1.4 Caenorhabditis elegans
WBGene00045350 mir-788 T01B10.6 Caenorhabditis elegans
WBGene00045359 mir-799 F18E9.9 Caenorhabditis elegans
WBGene00003348 mir-254 ZK455.9 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule