WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DEGseq and GFOLD were used to analyze miRNAs expression. Authors chose miRNAs which had more than two-fold difference in expression (P < 0.001, q < 0.01 of Storey) from DEGseq, and miRNAs which had more than two-fold difference in expression (GFOLD score > 0 for up-regulation and GFOLD score < 0 for down-regulation) from GFOLD outcomes. Then authors obtained the intersection of up-regulated miRNAs and down-regulated miRNAs for each stage from the chosen miRNAs, respectively. Description  miRNA with decreased expression in prg-1(wm161) L2 larva comparing to in prg-1(wm161) L1 larva.
Primary Identifier  WBPaper00045316:miRNA_prg-1_L2_vs_L1_downregulated_adult

0 Anatomy Terms

6 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003299 mir-71 F16A11.4 Caenorhabditis elegans
WBGene00003300 mir-72 F53G2.9 Caenorhabditis elegans
WBGene00003313 mir-85 F49E12.11 Caenorhabditis elegans
WBGene00003270 mir-42 ZK930.8 Caenorhabditis elegans
WBGene00003293 mir-65 Y48G9A.14 Caenorhabditis elegans
WBGene00003319 mir-124 C29E6.7 Caenorhabditis elegans

3 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule