WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  To identify the genes that show consistent and significant expression changes across the independent biological replicates of hcf-1(-) or sir-2.1(O/E), authors used Significance Analysis of Microarrays (SAM) with a stringent criteria of expected false discovery rate (FDR) set at 0%. Description  Genes upregulated in hcf-1(-), downregulated in sir-2.1(O/E) and upregulated in daf-2(-).
Primary Identifier  WBPaper00040184:hcf-1up_sir-2.1down_daf-2up
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0 Anatomy Terms

9 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003664 nhr-74 C27C7.3 Caenorhabditis elegans
WBGene00008681 scrm-4 F11A6.2 Caenorhabditis elegans
WBGene00014200 scrm-2 ZK1053.5 Caenorhabditis elegans
WBGene00016114 flp-27 C25H3.5 Caenorhabditis elegans
WBGene00019979 R09B5.11 R09B5.11 Caenorhabditis elegans
WBGene00020886 ttr-6 T28B4.3 Caenorhabditis elegans
WBGene00015236 B0511.11 B0511.11 Caenorhabditis elegans
WBGene00011244 R11D1.3 R11D1.3 Caenorhabditis elegans
WBGene00018702 F52E4.5 F52E4.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

3 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000898 daf-2 Y55D5A.5 Caenorhabditis elegans
WBGene00001827 hcf-1 C46A5.9 Caenorhabditis elegans
WBGene00004800 sir-2.1 R11A8.4 Caenorhabditis elegans

0 Regulated By Molecule