WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00101443 Genotype  rde-1(ne219)/+
Phenotype Remark  95% of pop-1(RNAi) animals exhibit defective T cell differentiation in which no phasmids are produced Remark  (Table 3) zygotic pop-1 RNAi (see treatment details). Authors report using genomic sequence of gene as template DNA for dsRNA sequence. Entire genomic sequence used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004077 pop-1 W10C8.2 Caenorhabditis elegans
WBGene00220126 W10C8.17 W10C8.17 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W10C8.2 W10C8.2 1317   I: 2823468-2823937

1 Laboratories

Primary Identifier
JK

3 Phenotype

Identifier Name Description
WBPhenotype:0001225 phasmid socket absent Animals are missing the interfacial hypodermal cell (socket cell) of the phasmid sensillum pore.
WBPhenotype:0000257 phasmid neuron morphology variant Animals exhibit variations in the quantity, structure or organization of the components of the neuronal cells of the phasmid sensillum, from that observed in control animals. In C. elegans, these neurons are commonly assayed by dye-filling experiments using FITC, DiI or DiO.
WBPhenotype:0000828 T lineages variant The descendants of TL or TR cells exhibit altered developmental programs compared to their counterparts in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005116

0 Strain