WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00071257 Genotype  bIs1(vit-2::GFP); rrf-3(pk1426)
Phenotype Remark  RNAi treatment resulted in an abnormal accumulation of YP170-GFP in the body cavity. Remark  Primary screen. L1 larval stage was applied to induced RNAi cultures.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F13B10.1c F13B10.1c 2946   III: 3870183-3870268
CDS:F13B10.1a F13B10.1a 2793   III: 3870183-3870277
CDS:F13B10.1f F13B10.1f 2955   III: 3870183-3870277
CDS:F13B10.1g F13B10.1g 2784   III: 3870183-3870268
CDS:F13B10.1b F13B10.1b 1761   III: 3870183-3870268
CDS:F13B10.1d F13B10.1d 1032   III: 3870183-3870268
CDS:F13B10.1e F13B10.1e 2406   III: 3870183-3870277
CDS:F13B10.1h F13B10.1h 1041   III: 3870183-3870277

1 Laboratories

Primary Identifier
RT

2 Phenotype

Identifier Name Description
WBPhenotype:0000961 pattern of transgene expression variant Any variation in the cellular or subcellular pattern of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001425 receptor mediated endocytosis defective Animals exhibit defects in the cell-mediated uptake of external materials via receptor activity. Receptor-mediated endocytosis ensures specificity of transport and generally occurs via clathrin-coated pits and vesicles. In C. elegans, this is often judged by the lack of yolk uptake in oocytes.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00030951

0 Strain