WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F13B10.1a Sequence Name  F13B10.1a
Length (nt)  2793   Chromosome Location  III: 3870183-3870277
Chromosome . Primary Identifier  III Chromosome Location . Start  3870183
Chromosome Location . End  3870277
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F13B10.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE20681 TIR-1, isoform a 104.6 930 Caenorhabditis elegans
 

Other

50 RNAi

WormBase ID
WBRNAi00112044
WBRNAi00063698
WBRNAi00068001
WBRNAi00044472
WBRNAi00073457
WBRNAi00068809
WBRNAi00013188
WBRNAi00073459
WBRNAi00073458
WBRNAi00071903
WBRNAi00005993
WBRNAi00030869
WBRNAi00071257
WBRNAi00077209
WBRNAi00077213
WBRNAi00077227
WBRNAi00077229
WBRNAi00095256
WBRNAi00068749
WBRNAi00073460
WBRNAi00072252
WBRNAi00073455
WBRNAi00073456
WBRNAi00065513
WBRNAi00073454
WBRNAi00117981
WBRNAi00087263
WBRNAi00087265
WBRNAi00077205
WBRNAi00077231

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F13B10.1a 3870183 3870277 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006575 tir-1 F13B10.1 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:F13B10.1a 3870183 3870277 -1
CDS:F13B10.1a 3870326 3870443 -1
CDS:F13B10.1a 3870600 3871634 -1
CDS:F13B10.1a 3880116 3880230 -1
CDS:F13B10.1a 3880279 3880656 -1
CDS:F13B10.1a 3880957 3881075 -1
CDS:F13B10.1a 3881123 3881353 -1
CDS:F13B10.1a 3881631 3882005 -1
CDS:F13B10.1a 3882307 3882547 -1
CDS:F13B10.1a 3890925 3891010 -1

1 Sequence

Length
2793

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F13B10.1a.2 F13B10.1a.2 3498   III: 3869590-3891460
Transcript:F13B10.1a.1 F13B10.1a.1 3712   III: 3869590-3901642