WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064781 Remark  Genetic enhancer interactions are identified by comparing RNAi phenotypes of library genes in wild-type animals with those seen in mutant worms carrying a defined lesion in a single query gene; a genetic interaction between a query gene and a library gene is observed if the phenotype of the combined perturbation is greater than the sum of the two individual perturbations.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014051 spv-1 ZK669.1 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK669.1a ZK669.1a 2901   II: 7913287-7913307
CDS:ZK669.1d ZK669.1d 1527   II: 7913287-7913307
CDS:ZK669.1e ZK669.1e 2556   II: 7913287-7913307
CDS:ZK669.1c ZK669.1c 2709   II: 7913287-7913307
CDS:ZK669.1b ZK669.1b 1641   II: 7913287-7913307

1 Laboratories

Primary Identifier
ANF

1 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027756

1 Strain

WormBase ID
WBStrain00035412