WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00069900 Phenotype Remark  tlf-1 Is required for bulk RNA polymerase IIdependent transcription in early embryos
Remark  Authors monitored bulk transcription in early tlf-1(RNAi) embryos using the monoclonal antibody H5. When the transcriptional apparatus shifts from initiation to elongation, the carboxy-terminal domain (CTD) of the large subunit of Pol II becomes phosphorylated, H5 recognizes phosphoserine at position two or five within the heptamer repeat of the CTD.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006577 tlf-1 F39H11.2 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39H11.2b F39H11.2b 1527   I: 8698316-8698372
CDS:F39H11.2a F39H11.2a 1518   I: 8698316-8698372

1 Laboratories

Primary Identifier
SM

1 Phenotype

Identifier Name Description
WBPhenotype:0000137 mRNA levels reduced Animals exhibit decreased levels of messenger RNA compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004351

0 Strain