WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00116565 Genotype  stIs10116 [his-72(promoter)::his-24::mCherry::let-858 3'UTR + unc-119(+)]
Phenotype Remark  abnormal division asynchrony, abnormal division angle, abnormal relative cell position; Specific cellular defects are listed in Tables S4 Sheet 1-6 Remark  afd-1 Ahringer clone

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021009 afd-1 W03F11.6 Caenorhabditis elegans

15 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03F11.6a W03F11.6a 4977   I: 2160071-2160199
CDS:W03F11.6d W03F11.6d 4689   I: 2160071-2160199
CDS:W03F11.6g W03F11.6g 4149   I: 2172031-2172170
CDS:W03F11.6k W03F11.6k 3684   I: 2185757-2185918
CDS:W03F11.6l W03F11.6l 3396   I: 2185757-2185918
CDS:W03F11.6e W03F11.6e 3759   I: 2192428-2192747
CDS:W03F11.6m W03F11.6m 3438   I: 2192845-2192905
CDS:W03F11.6b W03F11.6b 2037   I: 2197988-2198011
CDS:W03F11.6c W03F11.6c 4983   I: 2160071-2160199
CDS:W03F11.6f W03F11.6f 4695   I: 2160071-2160199
CDS:W03F11.6h W03F11.6h 3861   I: 2172031-2172170
CDS:W03F11.6i W03F11.6i 3963   I: 2173800-2173866
CDS:W03F11.6j W03F11.6j 3675   I: 2173800-2173866
CDS:W03F11.6n W03F11.6n 3150   I: 2192845-2192905
CDS:W03F11.6o W03F11.6o 4497   I: 2168112-2168432

0 Laboratories

3 Phenotype

Identifier Name Description
WBPhenotype:0002402 cell position defective A cell (or group of cells) is not found in the correct body position compared the placement in control animals.
WBPhenotype:0001120 relative cell cycle timing defective early emb Relative cell cycle timing during the first four cell divisions is aberrant.
WBPhenotype:0001133 division axis defective The cell division axis is not normal.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00064339

0 Strain