WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064662 Remark  Genetic enhancer interactions are identified by comparing RNAi phenotypes of library genes in wild-type animals with those seen in mutant worms carrying a defined lesion in a single query gene; a genetic interaction between a query gene and a library gene is observed if the phenotype of the combined perturbation is greater than the sum of the two individual perturbations.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
WBGene00003397 mom-5 T23D8.1 Caenorhabditis elegans

26 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T23D8.1b T23D8.1b 1713   I: 9965641-9966113
CDS:B0348.4a B0348.4a 4260   V: 21007-21090
CDS:B0348.4b B0348.4b 4296   V: 21007-21090
CDS:B0348.4f B0348.4f 4221   V: 21007-21090
CDS:B0348.4g B0348.4g 4185   V: 21007-21090
CDS:B0348.4h B0348.4h 3978   V: 21007-21090
CDS:B0348.4l B0348.4l 3798   V: 21007-21090
CDS:B0348.4m B0348.4m 3762   V: 21007-21090
CDS:B0348.4n B0348.4n 4455   V: 21007-21090
CDS:B0348.4q B0348.4q 4176   V: 21007-21090
CDS:B0348.4s B0348.4s 4101   V: 21007-21090
CDS:B0348.4r B0348.4r 4137   V: 21007-21090
CDS:B0348.4w B0348.4w 3921   V: 21007-21090
CDS:B0348.4x B0348.4x 3714   V: 21007-21090
CDS:B0348.4y B0348.4y 3678   V: 21007-21090
CDS:B0348.4d B0348.4d 4539   V: 21007-21090
CDS:B0348.4e B0348.4e 4503   V: 21007-21090
CDS:B0348.4i B0348.4i 3942   V: 21007-21090
CDS:B0348.4j B0348.4j 4041   V: 21007-21090
CDS:B0348.4k B0348.4k 4005   V: 21007-21090
CDS:B0348.4o B0348.4o 4419   V: 21007-21090
CDS:B0348.4p B0348.4p 4212   V: 21007-21090
CDS:B0348.4t B0348.4t 3894   V: 21007-21090
CDS:B0348.4u B0348.4u 3858   V: 21007-21090
CDS:B0348.4v B0348.4v 3957   V: 21007-21090
CDS:T23D8.1a T23D8.1a 1707   I: 9965641-9966113

1 Laboratories

Primary Identifier
ANF

2 Phenotype

Identifier Name Description
WBPhenotype:0000688 sterile Animals generate defective gametes, are otherwise unable to reproduce or they generate progeny that are unable to reproduce.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027756

1 Strain

WormBase ID
WBStrain00028995