WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114254 Phenotype Remark  no markers turn on
Remark  (Table S2) mbk-2 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003150 mbk-2 F49E11.1 Caenorhabditis elegans

14 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49E11.1b F49E11.1b 2454   IV: 13009158-13009229
CDS:F49E11.1c F49E11.1c 2391   IV: 13009158-13009229
CDS:F49E11.1g F49E11.1g 2403   IV: 13009158-13009229
CDS:F49E11.1k F49E11.1k 2340   IV: 13009158-13009229
CDS:F49E11.1h F49E11.1h 1608   IV: 13024534-13024618
CDS:F49E11.1l F49E11.1l 1545   IV: 13024534-13024618
CDS:F49E11.1e F49E11.1e 1506   IV: 13026421-13026448
CDS:F49E11.1i F49E11.1i 1572   IV: 13031334-13031382
CDS:F49E11.1m F49E11.1m 1509   IV: 13031334-13031382
CDS:F49E11.1d F49E11.1d 1428   IV: 13031644-13031768
CDS:F49E11.1n F49E11.1n 1410   IV: 13031644-13031768
CDS:F49E11.1a F49E11.1a 1527   IV: 13031334-13031382
CDS:F49E11.1f F49E11.1f 1518   IV: 13027264-13027303
CDS:F49E11.1j F49E11.1j 1473   IV: 13031644-13031768

0 Laboratories

5 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000816 neuron development variant Variations in the progression of a neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell compared to control.
WBPhenotype:0000361 lima bean arrest Cessation of development at an intermediate stage in embryogenesis, immediately following the completion of gastrulation. In C. elegans this occurs around 350-390 minutes after first cleavage, cell number is at approximately 560 cells. At this time cell proliferation ceases and the embryo begins morphogenesis and elongation. The shape of the entire embryo within the eggshell resembles a lima bean (Wormatlas).
WBPhenotype:0002569 hypodermis development variant Any variation in the progression of the hypodermis over time, from its formation to its mature state compared to control.
WBPhenotype:0002570 embryonic arrest during gastrulation Cessation of development during the gastrulation stage of embryonic development. In C. elegans, gastrulation occurs 100-290 minutes after first cleavage at 20 degrees Centigrade when the embryo develops from 28 cells to 421 cells (during the proliferating embryo life stage).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00056424

1 Strain

WormBase ID
WBStrain00047119