WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00093774 Genotype  alg-2(ok304)
Phenotype Remark  alg-1 RNAi results in a delayed deadenylation of the Renilla reniformis luciferase (RL) 6xmiR-35 RNA construct (carrying mir-35 binding sites) as well as of RL mRNAs with endogenous 3'UTRs from the genes spn-4, R05H11.2, and Y71F9B.8. Remark  (Figure 3B, 4B) alg-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000105 alg-1 F48F7.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F48F7.1a F48F7.1a 3009   X: 13951291-13951500
CDS:F48F7.1b F48F7.1b 3072   X: 13949489-13949522

1 Laboratories

Primary Identifier
FD

1 Phenotype

Identifier Name Description
WBPhenotype:0002151 mRNA deadenylation variant Animals exhibit variations in the extent to which polyadenylated mRNA transcripts become deadenylated

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00037823

0 Strain