WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F48F7.1a Sequence Name  F48F7.1a
Length (nt)  3009   Chromosome Location  X: 13951291-13951500
Chromosome . Primary Identifier  X Chromosome Location . Start  13951291
Chromosome Location . End  13951500
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48F7.1a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE31525 ALG-1, isoform a 110.9 1002 Caenorhabditis elegans
 

Other

45 RNAi

WormBase ID
WBRNAi00095627
WBRNAi00087447
WBRNAi00065485
WBRNAi00047761
WBRNAi00008819
WBRNAi00025553
WBRNAi00066792
WBRNAi00094027
WBRNAi00094535
WBRNAi00094536
WBRNAi00064859
WBRNAi00097789
WBRNAi00097788
WBRNAi00087452
WBRNAi00080900
WBRNAi00065493
WBRNAi00086723
WBRNAi00086730
WBRNAi00093821
WBRNAi00093811
WBRNAi00093774
WBRNAi00093729
WBRNAi00094534
WBRNAi00084646
WBRNAi00070057
WBRNAi00080904
WBRNAi00080903
WBRNAi00080906
WBRNAi00080908
WBRNAi00080910

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F48F7.1a 13951291 13951500 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000105 alg-1 F48F7.1 Caenorhabditis elegans

6 Locations


Feature . Primary Identifier
Start End Strand
CDS:F48F7.1a 13951291 13951500 1
CDS:F48F7.1a 13951603 13951775 1
CDS:F48F7.1a 13951922 13952092 1
CDS:F48F7.1a 13952146 13953608 1
CDS:F48F7.1a 13953664 13954616 1
CDS:F48F7.1a 13954669 13954707 1

1 Sequence

Length
3009

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F48F7.1a.2 F48F7.1a.2 5005   X: 13949110-13956261
Transcript:F48F7.1a.3 F48F7.1a.3 6283   X: 13949571-13956261
Transcript:F48F7.1a.1 F48F7.1a.1 4592   X: 13951262-13956261