WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56C11.2a.2 Sequence Name  F56C11.2a.2
Length (nt)  2813   Chromosome Location  I: 160172-169763
Chromosome . Primary Identifier  I Chromosome Location . Start  160172
Chromosome Location . End  169763 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56C11.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004225 ptr-11 F56C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56C11.2a F56C11.2a 2463   I: 160404-160546

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2a.2 160172 169763 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon391   375   I: 160172-160546 Caenorhabditis elegans
Exon395   288   I: 160712-160999 Caenorhabditis elegans
Exon398   293   I: 161597-161889 Caenorhabditis elegans
Exon401   230   I: 162368-162597 Caenorhabditis elegans
Exon404   73   I: 162645-162717 Caenorhabditis elegans
Exon407   332   I: 163099-163430 Caenorhabditis elegans
Exon410   109   I: 163500-163608 Caenorhabditis elegans
Exon413   395   I: 163809-164203 Caenorhabditis elegans
Exon416   89   I: 164677-164765 Caenorhabditis elegans
Exon420   109   I: 164900-165008 Caenorhabditis elegans
Exon422   111   I: 165377-165487 Caenorhabditis elegans
Exon424   118   I: 165543-165660 Caenorhabditis elegans
Exon426   103   I: 166002-166104 Caenorhabditis elegans
Exon428   73   I: 166747-166819 Caenorhabditis elegans
Exon429   115   I: 169649-169763 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2a.2 160172 169763 -1

1 Sequence

Length
2813

1 Sequence Ontology Term

Identifier Name Description
transcript