WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F56C11.2a Sequence Name  F56C11.2a
Length (nt)  2463   Chromosome Location  I: 160404-160546
Chromosome . Primary Identifier  I Chromosome Location . Start  160404
Chromosome Location . End  160546
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56C11.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE17902 PTR-11, isoform a 90.7 820 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00048650
WBRNAi00076951
WBRNAi00076919
WBRNAi00003809
WBRNAi00032935
WBRNAi00075794

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F56C11.2a 160404 160546 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004225 ptr-11 F56C11.2 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:F56C11.2a 160404 160546 -1
CDS:F56C11.2a 160712 160999 -1
CDS:F56C11.2a 161597 161889 -1
CDS:F56C11.2a 162368 162597 -1
CDS:F56C11.2a 162645 162717 -1
CDS:F56C11.2a 163099 163430 -1
CDS:F56C11.2a 163500 163608 -1
CDS:F56C11.2a 163809 164203 -1
CDS:F56C11.2a 164677 164765 -1
CDS:F56C11.2a 164900 165008 -1
CDS:F56C11.2a 165377 165487 -1
CDS:F56C11.2a 165543 165660 -1
CDS:F56C11.2a 166002 166104 -1
CDS:F56C11.2a 166747 166816 -1

1 Sequence

Length
2463

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F56C11.2a.2 F56C11.2a.2 2813   I: 160172-169763
Transcript:F56C11.2a.1 F56C11.2a.1 2680   I: 160190-166819