WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56C11.2a.1 Sequence Name  F56C11.2a.1
Length (nt)  2680   Chromosome Location  I: 160190-166819
Chromosome . Primary Identifier  I Chromosome Location . Start  160190
Chromosome Location . End  166819 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56C11.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004225 ptr-11 F56C11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56C11.2a F56C11.2a 2463   I: 160404-160546

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2a.1 160190 166819 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon392   357   I: 160190-160546 Caenorhabditis elegans
Exon394   288   I: 160712-160999 Caenorhabditis elegans
Exon397   293   I: 161597-161889 Caenorhabditis elegans
Exon400   230   I: 162368-162597 Caenorhabditis elegans
Exon403   73   I: 162645-162717 Caenorhabditis elegans
Exon406   332   I: 163099-163430 Caenorhabditis elegans
Exon409   109   I: 163500-163608 Caenorhabditis elegans
Exon412   395   I: 163809-164203 Caenorhabditis elegans
Exon415   89   I: 164677-164765 Caenorhabditis elegans
Exon419   109   I: 164900-165008 Caenorhabditis elegans
Exon421   111   I: 165377-165487 Caenorhabditis elegans
Exon423   118   I: 165543-165660 Caenorhabditis elegans
Exon425   103   I: 166002-166104 Caenorhabditis elegans
Exon427   73   I: 166747-166819 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56C11.2a.1 160190 166819 -1

1 Sequence

Length
2680

1 Sequence Ontology Term

Identifier Name Description
transcript