WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y48G1BR.1.1 Sequence Name  Y48G1BR.1.1
Length (nt)  2101   Chromosome Location  I: 254254-259157
Chromosome . Primary Identifier  I Chromosome Location . Start  254254
Chromosome Location . End  259157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48G1BR.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021675 Y48G1BR.1 Y48G1BR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y48G1BR.1 Y48G1BR.1 1644   I: 254709-254802

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1BR.1.1 254254 259157 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon599   549   I: 254254-254802 Caenorhabditis elegans
Exon600   104   I: 254976-255079 Caenorhabditis elegans
Exon601   131   I: 255195-255325 Caenorhabditis elegans
Exon602   77   I: 255370-255446 Caenorhabditis elegans
Exon603   143   I: 255818-255960 Caenorhabditis elegans
Exon604   328   I: 256316-256643 Caenorhabditis elegans
Exon605   244   I: 257418-257661 Caenorhabditis elegans
Exon606   338   I: 258021-258358 Caenorhabditis elegans
Exon607   136   I: 258548-258683 Caenorhabditis elegans
Exon608   51   I: 259107-259157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y48G1BR.1.1 254254 259157 -1

1 Sequence

Length
2101

1 Sequence Ontology Term

Identifier Name Description
transcript