WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56A6.1a.1 Sequence Name  F56A6.1a.1
Length (nt)  2890   Chromosome Location  I: 618160-621490
Chromosome . Primary Identifier  I Chromosome Location . Start  618160
Chromosome Location . End  621490 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56A6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018921 sago-2 F56A6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56A6.1a F56A6.1a 2664   I: 618207-618357

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56A6.1a.1 618160 621490 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon1208   198   I: 618160-618357 Caenorhabditis elegans
Exon1210   254   I: 618415-618668 Caenorhabditis elegans
Exon1212   200   I: 618713-618912 Caenorhabditis elegans
Exon1214   60   I: 618959-619018 Caenorhabditis elegans
Exon1216   119   I: 619069-619187 Caenorhabditis elegans
Exon1218   443   I: 619247-619689 Caenorhabditis elegans
Exon1220   287   I: 619738-620024 Caenorhabditis elegans
Exon1222   397   I: 620070-620466 Caenorhabditis elegans
Exon1224   656   I: 620513-621168 Caenorhabditis elegans
Exon1226   276   I: 621215-621490 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56A6.1a.1 618160 621490 1

1 Sequence

Length
2890

1 Sequence Ontology Term

Identifier Name Description
transcript