WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y18H1A.3e.1 Sequence Name  Y18H1A.3e.1
Length (nt)  3946   Chromosome Location  I: 700634-715875
Chromosome . Primary Identifier  I Chromosome Location . Start  700634
Chromosome Location . End  715875 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y18H1A.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021209 hgap-1 Y18H1A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y18H1A.3e Y18H1A.3e 3921   I: 700634-700786

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y18H1A.3e.1 700634 715875 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon1382   153   I: 700634-700786 Caenorhabditis elegans
Exon1387   108   I: 701756-701863 Caenorhabditis elegans
Exon1392   1737   I: 702249-703985 Caenorhabditis elegans
Exon1396   132   I: 704419-704550 Caenorhabditis elegans
Exon1400   246   I: 706419-706664 Caenorhabditis elegans
Exon1403   325   I: 707946-708270 Caenorhabditis elegans
Exon1406   227   I: 710039-710265 Caenorhabditis elegans
Exon1408   265   I: 711731-711995 Caenorhabditis elegans
Exon1410   433   I: 713216-713648 Caenorhabditis elegans
Exon1412   169   I: 715474-715642 Caenorhabditis elegans
Exon1414   151   I: 715725-715875 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y18H1A.3e.1 700634 715875 -1

1 Sequence

Length
3946

1 Sequence Ontology Term

Identifier Name Description
transcript