WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71G12A.2b.1 Sequence Name  Y71G12A.2b.1
Length (nt)  3686   Chromosome Location  I: 1895176-1923240
Chromosome . Primary Identifier  I Chromosome Location . Start  1895176
Chromosome Location . End  1923240 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71G12A.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022138 trpp-10 Y71G12A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71G12A.2b Y71G12A.2b 3339   I: 1895235-1895304

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2b.1 1895176 1923240 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon3278   129   I: 1895176-1895304 Caenorhabditis elegans
Exon3281   82   I: 1895356-1895437 Caenorhabditis elegans
Exon3283   199   I: 1895498-1895696 Caenorhabditis elegans
Exon3286   303   I: 1896475-1896777 Caenorhabditis elegans
Exon3291   399   I: 1899028-1899426 Caenorhabditis elegans
Exon3295   389   I: 1902510-1902898 Caenorhabditis elegans
Exon3299   258   I: 1904345-1904602 Caenorhabditis elegans
Exon3302   223   I: 1906018-1906240 Caenorhabditis elegans
Exon3306   307   I: 1908199-1908505 Caenorhabditis elegans
Exon3310   254   I: 1910215-1910468 Caenorhabditis elegans
Exon3318   95   I: 1917034-1917128 Caenorhabditis elegans
Exon3322   482   I: 1917750-1918231 Caenorhabditis elegans
Exon3327   110   I: 1919230-1919339 Caenorhabditis elegans
Exon3336   456   I: 1922785-1923240 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71G12A.2b.1 1895176 1923240 1

1 Sequence

Length
3686

1 Sequence Ontology Term

Identifier Name Description
transcript