WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39G10AR.18a.1 Sequence Name  Y39G10AR.18a.1
Length (nt)  3343   Chromosome Location  I: 2382953-2401492
Chromosome . Primary Identifier  I Chromosome Location . Start  2382953
Chromosome Location . End  2401492 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39G10AR.18a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021474 dot-1.1 Y39G10AR.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39G10AR.18a Y39G10AR.18a 2841   I: 2384591-2384991

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.18a.1 2382953 2401492 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4383   492   I: 2382953-2383444 Caenorhabditis elegans
Exon4385   407   I: 2384585-2384991 Caenorhabditis elegans
Exon4388   622   I: 2388157-2388778 Caenorhabditis elegans
Exon4393   77   I: 2389883-2389959 Caenorhabditis elegans
Exon4396   277   I: 2390884-2391160 Caenorhabditis elegans
Exon4399   237   I: 2392472-2392708 Caenorhabditis elegans
Exon4404   147   I: 2396104-2396250 Caenorhabditis elegans
Exon4405   107   I: 2396306-2396412 Caenorhabditis elegans
Exon4406   44   I: 2397636-2397679 Caenorhabditis elegans
Exon4407   207   I: 2397729-2397935 Caenorhabditis elegans
Exon4408   209   I: 2399182-2399390 Caenorhabditis elegans
Exon4409   153   I: 2400616-2400768 Caenorhabditis elegans
Exon4410   130   I: 2401009-2401138 Caenorhabditis elegans
Exon4411   199   I: 2401210-2401408 Caenorhabditis elegans
Exon4412   35   I: 2401458-2401492 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39G10AR.18a.1 2382953 2401492 -1

1 Sequence

Length
3343

1 Sequence Ontology Term

Identifier Name Description
transcript