WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y23H5A.5d.1 Sequence Name  Y23H5A.5d.1
Length (nt)  2725   Chromosome Location  I: 2606752-2617353
Chromosome . Primary Identifier  I Chromosome Location . Start  2606752
Chromosome Location . End  2617353 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y23H5A.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000832 ctn-1 Y23H5A.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y23H5A.5d Y23H5A.5d 2355   I: 2606783-2606932

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y23H5A.5d.1 2606752 2617353 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon4723   181   I: 2606752-2606932 Caenorhabditis elegans
Exon4730   84   I: 2607212-2607295 Caenorhabditis elegans
Exon4736   121   I: 2608188-2608308 Caenorhabditis elegans
Exon4742   167   I: 2608861-2609027 Caenorhabditis elegans
Exon4748   420   I: 2609889-2610308 Caenorhabditis elegans
Exon4754   438   I: 2611371-2611808 Caenorhabditis elegans
Exon4760   93   I: 2611863-2611955 Caenorhabditis elegans
Exon4766   93   I: 2612003-2612095 Caenorhabditis elegans
Exon4771   99   I: 2612788-2612886 Caenorhabditis elegans
Exon4777   51   I: 2613334-2613384 Caenorhabditis elegans
Exon4782   471   I: 2614019-2614489 Caenorhabditis elegans
Exon4790   78   I: 2615077-2615154 Caenorhabditis elegans
Exon4795   90   I: 2615848-2615937 Caenorhabditis elegans
Exon4799   76   I: 2616003-2616078 Caenorhabditis elegans
Exon4801   263   I: 2617091-2617353 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y23H5A.5d.1 2606752 2617353 1

1 Sequence

Length
2725

1 Sequence Ontology Term

Identifier Name Description
transcript