WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y23H5A.5d Sequence Name  Y23H5A.5d
Length (nt)  2355   Chromosome Location  I: 2606783-2606932
Chromosome . Primary Identifier  I Chromosome Location . Start  2606783
Chromosome Location . End  2606932
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y23H5A.5d

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE46567 CTN-1, isoform d 87.2 784 Caenorhabditis elegans
 

Other

7 RNAi

WormBase ID
WBRNAi00002350
WBRNAi00055701
WBRNAi00055702
WBRNAi00004565
WBRNAi00022472
WBRNAi00036720
WBRNAi00116607

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y23H5A.5d 2606783 2606932 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000832 ctn-1 Y23H5A.5 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y23H5A.5d 2606783 2606932 1
CDS:Y23H5A.5d 2607212 2607295 1
CDS:Y23H5A.5d 2608188 2608308 1
CDS:Y23H5A.5d 2608861 2609027 1
CDS:Y23H5A.5d 2609889 2610308 1
CDS:Y23H5A.5d 2611371 2611808 1
CDS:Y23H5A.5d 2611863 2611955 1
CDS:Y23H5A.5d 2612003 2612095 1
CDS:Y23H5A.5d 2612788 2612886 1
CDS:Y23H5A.5d 2613334 2613384 1
CDS:Y23H5A.5d 2614019 2614489 1
CDS:Y23H5A.5d 2615077 2615154 1
CDS:Y23H5A.5d 2615848 2615937 1

1 Sequence

Length
2355

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y23H5A.5d.1 Y23H5A.5d.1 2725   I: 2606752-2617353
Transcript:Y23H5A.5d.2 Y23H5A.5d.2 2655   I: 2606753-2617360
Transcript:Y23H5A.5d.3 Y23H5A.5d.3 2788   I: 2606754-2617353