WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.5b.1 Sequence Name  Y71F9B.5b.1
Length (nt)  1906   Chromosome Location  I: 2707598-2717549
Chromosome . Primary Identifier  I Chromosome Location . Start  2707598
Chromosome Location . End  2717549 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003006 lin-17 Y71F9B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.5b Y71F9B.5b 1671   I: 2707629-2707694

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5b.1 2707598 2717549 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5075   97   I: 2707598-2707694 Caenorhabditis elegans
Exon5080   105   I: 2708102-2708206 Caenorhabditis elegans
Exon5084   147   I: 2709920-2710066 Caenorhabditis elegans
Exon5088   285   I: 2711121-2711405 Caenorhabditis elegans
Exon5093   110   I: 2712439-2712548 Caenorhabditis elegans
Exon5098   222   I: 2713851-2714072 Caenorhabditis elegans
Exon5103   289   I: 2714120-2714408 Caenorhabditis elegans
Exon5110   331   I: 2714728-2715058 Caenorhabditis elegans
Exon5115   320   I: 2717230-2717549 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5b.1 2707598 2717549 1

1 Sequence

Length
1906

1 Sequence Ontology Term

Identifier Name Description
transcript