WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9B.5c.1 Sequence Name  Y71F9B.5c.1
Length (nt)  1473   Chromosome Location  I: 2709953-2717355
Chromosome . Primary Identifier  I Chromosome Location . Start  2709953
Chromosome Location . End  2717355 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9B.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003006 lin-17 Y71F9B.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9B.5c Y71F9B.5c 1473   I: 2709953-2710066

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5c.1 2709953 2717355 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5085   114   I: 2709953-2710066 Caenorhabditis elegans
Exon5089   285   I: 2711121-2711405 Caenorhabditis elegans
Exon5094   110   I: 2712439-2712548 Caenorhabditis elegans
Exon5099   222   I: 2713851-2714072 Caenorhabditis elegans
Exon5104   289   I: 2714120-2714408 Caenorhabditis elegans
Exon5108   327   I: 2714728-2715054 Caenorhabditis elegans
Exon5112   126   I: 2717230-2717355 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9B.5c.1 2709953 2717355 1

1 Sequence

Length
1473

1 Sequence Ontology Term

Identifier Name Description
transcript