WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71F9AL.18a.1 Sequence Name  Y71F9AL.18a.1
Length (nt)  2984   Chromosome Location  I: 2907730-2924713
Chromosome . Primary Identifier  I Chromosome Location . Start  2907730
Chromosome Location . End  2924713 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71F9AL.18a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004049 parp-1 Y71F9AL.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71F9AL.18a Y71F9AL.18a 2838   I: 2907857-2907935

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AL.18a.1 2907730 2924713 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5716   206   I: 2907730-2907935 Caenorhabditis elegans
Exon5721   254   I: 2907982-2908235 Caenorhabditis elegans
Exon5726   216   I: 2910381-2910596 Caenorhabditis elegans
Exon5731   237   I: 2911987-2912223 Caenorhabditis elegans
Exon5735   333   I: 2913775-2914107 Caenorhabditis elegans
Exon5745   205   I: 2919515-2919719 Caenorhabditis elegans
Exon5749   578   I: 2921373-2921950 Caenorhabditis elegans
Exon5751   123   I: 2923045-2923167 Caenorhabditis elegans
Exon5753   720   I: 2923817-2924536 Caenorhabditis elegans
Exon5755   112   I: 2924602-2924713 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71F9AL.18a.1 2907730 2924713 -1

1 Sequence

Length
2984

1 Sequence Ontology Term

Identifier Name Description
transcript