WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10BR.8.1 Sequence Name  Y54E10BR.8.1
Length (nt)  1434   Chromosome Location  I: 3052048-3059165
Chromosome . Primary Identifier  I Chromosome Location . Start  3052048
Chromosome Location . End  3059165 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021846 ztf-23 Y54E10BR.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10BR.8 Y54E10BR.8 1260   I: 3052128-3052168

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.8.1 3052048 3059165 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5914   121   I: 3052048-3052168 Caenorhabditis elegans
Exon5915   73   I: 3053469-3053541 Caenorhabditis elegans
Exon5916   84   I: 3053619-3053702 Caenorhabditis elegans
Exon5917   285   I: 3055314-3055598 Caenorhabditis elegans
Exon5918   99   I: 3057177-3057275 Caenorhabditis elegans
Exon5919   87   I: 3057338-3057424 Caenorhabditis elegans
Exon5920   140   I: 3057478-3057617 Caenorhabditis elegans
Exon5922   70   I: 3058394-3058463 Caenorhabditis elegans
Exon5923   57   I: 3058518-3058574 Caenorhabditis elegans
Exon5924   132   I: 3058638-3058769 Caenorhabditis elegans
Exon5925   140   I: 3058834-3058973 Caenorhabditis elegans
Exon5926   146   I: 3059020-3059165 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.8.1 3052048 3059165 -1

1 Sequence

Length
1434

1 Sequence Ontology Term

Identifier Name Description
transcript