WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E10BR.1b.1 Sequence Name  Y54E10BR.1b.1
Length (nt)  4494   Chromosome Location  I: 3057694-3069403
Chromosome . Primary Identifier  I Chromosome Location . Start  3057694
Chromosome Location . End  3069403 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021840 pign-1 Y54E10BR.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E10BR.1b Y54E10BR.1b 2721   I: 3059314-3059473

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1b.1 3057694 3069403 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon5921   1780   I: 3057694-3059473 Caenorhabditis elegans
Exon5929   77   I: 3059530-3059606 Caenorhabditis elegans
Exon5931   300   I: 3059658-3059957 Caenorhabditis elegans
Exon5933   148   I: 3060447-3060594 Caenorhabditis elegans
Exon5935   341   I: 3061201-3061541 Caenorhabditis elegans
Exon5937   284   I: 3062307-3062590 Caenorhabditis elegans
Exon5939   281   I: 3064672-3064952 Caenorhabditis elegans
Exon5941   115   I: 3065003-3065117 Caenorhabditis elegans
Exon5943   238   I: 3066535-3066772 Caenorhabditis elegans
Exon5945   120   I: 3066842-3066961 Caenorhabditis elegans
Exon5947   142   I: 3067738-3067879 Caenorhabditis elegans
Exon5949   293   I: 3067930-3068222 Caenorhabditis elegans
Exon5950   375   I: 3069029-3069403 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E10BR.1b.1 3057694 3069403 1

1 Sequence

Length
4494

1 Sequence Ontology Term

Identifier Name Description
transcript