WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54E10BR.1b Sequence Name  Y54E10BR.1b
Length (nt)  2721   Chromosome Location  I: 3059314-3059473
Chromosome . Primary Identifier  I Chromosome Location . Start  3059314
Chromosome Location . End  3059473
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10BR.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE34410 PIGN-1, isoform b 102.5 906 Caenorhabditis elegans
 

Other

18 RNAi

WormBase ID
WBRNAi00095800
WBRNAi00034338
WBRNAi00057359
WBRNAi00003995
WBRNAi00004735
WBRNAi00076817
WBRNAi00092045
WBRNAi00111236
WBRNAi00095914
WBRNAi00095991
WBRNAi00096066
WBRNAi00096143
WBRNAi00096220
WBRNAi00096297
WBRNAi00096395
WBRNAi00096478
WBRNAi00096561
WBRNAi00096660

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54E10BR.1b 3059314 3059473 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021840 pign-1 Y54E10BR.1 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54E10BR.1b 3059314 3059473 1
CDS:Y54E10BR.1b 3059530 3059606 1
CDS:Y54E10BR.1b 3059658 3059957 1
CDS:Y54E10BR.1b 3060447 3060594 1
CDS:Y54E10BR.1b 3061201 3061541 1
CDS:Y54E10BR.1b 3062307 3062590 1
CDS:Y54E10BR.1b 3064672 3064952 1
CDS:Y54E10BR.1b 3065003 3065117 1
CDS:Y54E10BR.1b 3066535 3066772 1
CDS:Y54E10BR.1b 3066842 3066961 1
CDS:Y54E10BR.1b 3067738 3067879 1
CDS:Y54E10BR.1b 3067930 3068222 1
CDS:Y54E10BR.1b 3069029 3069250 1

1 Sequence

Length
2721

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E10BR.1b.1 Y54E10BR.1b.1 4494   I: 3057694-3069403