WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y54E10A.9b Sequence Name  Y54E10A.9b
Length (nt)  1935   Chromosome Location  I: 3159764-3159867
Chromosome . Primary Identifier  I Chromosome Location . Start  3159764
Chromosome Location . End  3159867
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E10A.9b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28369 VBH-1, isoform b 69.6 644 Caenorhabditis elegans
 

Other

13 RNAi

WormBase ID
WBRNAi00075500
WBRNAi00001330
WBRNAi00078431
WBRNAi00078432
WBRNAi00057353
WBRNAi00037458
WBRNAi00083594
WBRNAi00083698
WBRNAi00083787
WBRNAi00001548
WBRNAi00075499
WBRNAi00084851
WBRNAi00083509

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.9b 3159764 3159867 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006888 vbh-1 Y54E10A.9 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y54E10A.9b 3159764 3159867 -1
CDS:Y54E10A.9b 3159923 3160107 -1
CDS:Y54E10A.9b 3160155 3161215 -1
CDS:Y54E10A.9b 3161284 3161596 -1
CDS:Y54E10A.9b 3161643 3161702 -1
CDS:Y54E10A.9b 3161739 3161789 -1
CDS:Y54E10A.9b 3162077 3162169 -1
CDS:Y54E10A.9b 3162216 3162283 -1

1 Sequence

Length
1935

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y54E10A.9b.1 Y54E10A.9b.1 3315   I: 3158492-3162391