WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47G6A.12.1 Sequence Name  Y47G6A.12.1
Length (nt)  3941   Chromosome Location  I: 3433158-3438543
Chromosome . Primary Identifier  I Chromosome Location . Start  3433158
Chromosome Location . End  3438543 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47G6A.12.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004775 sep-1 Y47G6A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.12 Y47G6A.12 3789   I: 3433300-3433963

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.12.1 3433158 3438543 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon6940   806   I: 3433158-3433963 Caenorhabditis elegans
Exon6941   96   I: 3434016-3434111 Caenorhabditis elegans
Exon6942   179   I: 3434162-3434340 Caenorhabditis elegans
Exon6943   895   I: 3434695-3435589 Caenorhabditis elegans
Exon6944   302   I: 3435640-3435941 Caenorhabditis elegans
Exon6945   123   I: 3435993-3436115 Caenorhabditis elegans
Exon6946   226   I: 3436165-3436390 Caenorhabditis elegans
Exon6947   400   I: 3437123-3437522 Caenorhabditis elegans
Exon6948   160   I: 3437580-3437739 Caenorhabditis elegans
Exon6949   754   I: 3437790-3438543 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47G6A.12.1 3433158 3438543 -1

1 Sequence

Length
3941

1 Sequence Ontology Term

Identifier Name Description
transcript