WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D1007.5a.1 Sequence Name  D1007.5a.1
Length (nt)  1724   Chromosome Location  I: 4580708-4583810
Chromosome . Primary Identifier  I Chromosome Location . Start  4580708
Chromosome Location . End  4583810 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D1007.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017003 tmem-39 D1007.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D1007.5a D1007.5a 1434   I: 4580992-4581240

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D1007.5a.1 4580708 4583810 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

6 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon10294   533   I: 4580708-4581240 Caenorhabditis elegans
Exon10296   363   I: 4581663-4582025 Caenorhabditis elegans
Exon10298   307   I: 4582411-4582717 Caenorhabditis elegans
Exon10300   185   I: 4583189-4583373 Caenorhabditis elegans
Exon10302   84   I: 4583425-4583508 Caenorhabditis elegans
Exon10305   252   I: 4583559-4583810 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D1007.5a.1 4580708 4583810 -1

1 Sequence

Length
1724

1 Sequence Ontology Term

Identifier Name Description
transcript