WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11a.1 Sequence Name  C46H11.11a.1
Length (nt)  4411   Chromosome Location  I: 5058251-5068829
Chromosome . Primary Identifier  I Chromosome Location . Start  5058251
Chromosome Location . End  5068829 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11a C46H11.11a 4041   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11a.1 5058251 5068829 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11502   425   I: 5058251-5058675 Caenorhabditis elegans
Exon11509   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11517   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11525   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11533   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11541   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11549   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11557   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11565   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11573   474   I: 5062125-5062598 Caenorhabditis elegans
Exon11577   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11585   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11597   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11605   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11613   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11625   175   I: 5068201-5068375 Caenorhabditis elegans
Exon11630   134   I: 5068696-5068829 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11a.1 5058251 5068829 -1

1 Sequence

Length
4411

1 Sequence Ontology Term

Identifier Name Description
transcript