WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C46H11.11d.1 Sequence Name  C46H11.11d.1
Length (nt)  3751   Chromosome Location  I: 5058490-5068831
Chromosome . Primary Identifier  I Chromosome Location . Start  5058490
Chromosome Location . End  5068831 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C46H11.11d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016735 fhod-1 C46H11.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46H11.11d C46H11.11d 3618   I: 5058620-5058675

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11d.1 5058490 5068831 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon11503   186   I: 5058490-5058675 Caenorhabditis elegans
Exon11512   120   I: 5058800-5058919 Caenorhabditis elegans
Exon11520   1222   I: 5058965-5060186 Caenorhabditis elegans
Exon11528   290   I: 5060238-5060527 Caenorhabditis elegans
Exon11536   337   I: 5060774-5061110 Caenorhabditis elegans
Exon11544   129   I: 5061157-5061285 Caenorhabditis elegans
Exon11552   138   I: 5061357-5061494 Caenorhabditis elegans
Exon11560   88   I: 5061610-5061697 Caenorhabditis elegans
Exon11568   147   I: 5061852-5061998 Caenorhabditis elegans
Exon11580   173   I: 5063151-5063323 Caenorhabditis elegans
Exon11588   231   I: 5063373-5063603 Caenorhabditis elegans
Exon11594   51   I: 5064074-5064124 Caenorhabditis elegans
Exon11600   201   I: 5064194-5064394 Caenorhabditis elegans
Exon11608   68   I: 5064608-5064675 Caenorhabditis elegans
Exon11616   59   I: 5065230-5065288 Caenorhabditis elegans
Exon11628   175   I: 5068201-5068375 Caenorhabditis elegans
Exon11632   136   I: 5068696-5068831 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C46H11.11d.1 5058490 5068831 -1

1 Sequence

Length
3751

1 Sequence Ontology Term

Identifier Name Description
transcript